Don't you believe there wasn't a corpse to hide?
It is rather hard to describe but try and picture this.
I think there was the intention to play a trick on Kate, for the friends thought it so wrong to have let Madeleine come to the Tapas if she wanted to.
So they were going to emphasise the risk of being interfered with. What degree I have not been able to determine.
There was plan 1, but something comes up and the emphasis can be made even stronger so they go with plan 2.
Someone delivers a cadaver in a bag to the McCann's apartment.
But the people playing the prank don't realise Madeleine has been woken by an earlier attempted burglary, she is hiding when Matt comes in, and takes off when someone else comes in to set up the scene.
The priority then becomes one of locating Madeleine and the scene is not set, and the cadaver hence is left in the apartment.
Kate doesn't know about the corpse and doesn't think of looking in the suitcase.