There were many with that belief.
Read what Professor Dan Kane and Mr Justice Weir said at the trial of Sean Hoey in December 2007.
Also the comments on LCN techniques made by the procedures deviser Peter Gill, at the Hoey trial; his statement led to caustic comments about the reliability of the techniques by Mr Justice Weir.
http://news.bbc.co.uk/1/hi/northern_ireland/7154189.stm
Yes, I'm aware of controversial cases involving LCN.
However, in this case, where there was not enough DNA to do the tests via other means, LCN was the only other option, AFAIK. So it was that or nothing.
As it is so sensitive, contamination can occur, and requires stringent protocols and sterile conditions. An interesting Portuguese forensic blog that I'd once found explained that it wasn't that PT didn't have the technical expertise to be able to do LCN, but it was that the investment in the conditions necessary were too high (at least at the time - the blog articles would have been around 2008).
But that's not my issue with Amaral's understanding of forensics.
He makes it sound as if the lab had confirmed blood - which it hadn't... you have to read much further down to discover that, according to him, it had to be blood as Keela had reacted. (Perhaps Keela was correct, but if she is indeed capable of detecting blood to molecular level, then there's no way of detecting whose it may have been - it could even be from someone who'd previously rented the car.)
He then says that he'd been informed that 50% of Gerry's alleles were found it the sample... (Perhaps, but that's not in the FSS reports. So that must be hearsay.)
And then, this leap into fuzzy logic asserting that the remainder must therefore be blood from one of his children, and it couldn't have been one of the twins because the lab had their profiles.
In a sample containing 37 alleles from between 3 to 5 donors, and in which only 15 of Madeleine's alleles were found, and in which no blood had been identified by forensic means, that categorical assertion just doesn't follow.
As only 15 were found, either her full profile
had been in it, but the sample had been degraded by the sun, humidity or whatever else, or the alleles didn't belong to her and were simply the combination of those alleles in her profile which were also present in the profiles of the various donors.
And even if it had been her DNA in the car... it still doesn't mean anything sinister at all.